STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selOUncharacterized conserved protein YdiU, UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (518 aa)    
Predicted Functional Partners:
msrB
Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
  
 0.715
SDR21312.1
Peptidyl-prolyl cis-trans isomerase C.
 
 
   0.546
SDR21397.1
fatty-acyl-CoA synthase.
       0.521
SDR21329.1
Transcriptional regulator, BolA protein family; Belongs to the BolA/IbaG family.
       0.452
SDR21348.1
Intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.452
SDQ98219.1
Autotransporter secretion outer membrane protein TamA.
   
    0.443
SDR61250.1
Surface antigen.
   
    0.432
SDQ97733.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
      0.418
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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