STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR41616.1Uncharacterized conserved protein, DUF1501 family. (382 aa)    
Predicted Functional Partners:
SDR41628.1
Uncharacterized conserved protein, DUF1800 family.
 
     0.955
SDR41638.1
Uncharacterized membrane protein.
 
     0.815
SDR03133.1
Glycosyl transferase family 2.
   
    0.771
SDQ33940.1
Bacterioferritin.
   
    0.703
SDQ34323.1
Osmotically inducible lipoprotein OsmB.
   
    0.703
SDR41660.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.659
SDR41649.1
Hypothetical protein.
       0.599
SDQ34004.1
Protein of unknown function.
  
    0.517
SDR45114.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
    0.510
SDQ39604.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
   
    0.491
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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