STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR50745.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (424 aa)    
Predicted Functional Partners:
SDR50750.1
Uncharacterized conserved protein.
 
     0.907
SDR50755.1
Uncharacterized conserved protein.
 
     0.862
SDR13814.1
Uncharacterized conserved protein.
 
     0.796
SDR59060.1
Uncharacterized conserved protein.
 
     0.796
SDR58324.1
Transcriptional regulator, ArsR family.
  
     0.600
SDR58326.1
Transcriptional regulator, ArsR family.
 
     0.476
SDR09307.1
Predicted dithiol-disulfide oxidoreductase, DUF899 family.
 
    0.434
SDQ50565.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.427
SDR60315.1
Dihydrofolate reductase.
  
     0.425
SDR48895.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
     0.423
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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