STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR52863.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
SDR52858.1
Phage terminase, large subunit GpA; Manually curated.
       0.773
SDR52871.1
Phage portal protein, lambda family.
       0.773
SDR52876.1
Protein C Serine peptidase. MEROPS family S49.
       0.773
SDR52881.1
Hypothetical protein.
       0.664
SDR52885.1
Phage major capsid protein E.
       0.462
SDR52890.1
Hypothetical protein.
       0.415
SDR52894.1
Hypothetical protein.
       0.415
SDR52898.1
Hypothetical protein.
       0.415
SDR52903.1
Hypothetical protein.
       0.403
SDR52907.1
Mu-like prophage tail sheath protein gpL.
       0.403
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.