STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR61975.1Transcriptional regulator, AsnC family. (165 aa)    
Predicted Functional Partners:
SDR26097.1
Transcriptional regulator, AsnC family.
  
     0.741
SDR61972.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.696
SDR46504.1
3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit.
    
 0.659
SDR61968.1
Predicted N-acetyltransferase YhbS.
 
     0.588
SDQ90887.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
     
 0.547
SDR61970.1
Glyoxylate/hydroxypyruvate reductase A.
 
     0.531
SDR59520.1
2-haloacid dehalogenase.
  
  
  0.467
SDR61963.1
2-haloacid dehalogenase.
  
  
  0.465
SDR62006.1
2-haloacid dehalogenase.
  
  
  0.462
SDQ72471.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.443
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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