STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR62016.1Glycine/D-amino acid oxidase. (425 aa)    
Predicted Functional Partners:
SDR56798.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.989
SDR62015.1
Acyl-CoA reductase.
 
 
  0.854
SDR62020.1
Ribosomal protein S18 acetylase RimI.
 
     0.845
SDR59541.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 
 0.839
SDQ64494.1
Glutamate synthase (NADH) large subunit.
  
 
 0.831
SDR59832.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 
 0.797
SDR56801.1
Sarcosine oxidase subunit delta.
  
 0.775
SDR61963.1
2-haloacid dehalogenase.
 
     0.768
SDR62006.1
2-haloacid dehalogenase.
 
     0.768
SDR59520.1
2-haloacid dehalogenase.
 
     0.767
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.