STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR63054.1Integrase core domain-containing protein. (359 aa)    
Predicted Functional Partners:
SDR63056.1
DNA replication protein DnaC.
 
  
 0.949
SDR61688.1
DNA replication protein DnaC.
 
  
 0.791
SDR62561.1
DNA replication protein DnaC.
 
  
 0.790
SDQ60605.1
IstB transposition helper protein.
 
  
 0.787
SDQ60931.1
DNA replication protein DnaC.
 
  
 0.787
SDR60963.1
DNA replication protein DnaC.
 
  
 0.787
SDR63057.1
Hypothetical protein.
       0.773
SDR61689.1
Integrase core domain-containing protein.
  
     0.766
SDR60951.1
Hypothetical protein.
  
     0.663
SDR63048.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
       0.473
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.