STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF61321.1AAA family ATPase, CDC48 subfamily. (759 aa)    
Predicted Functional Partners:
pcn
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.
  
 
 0.958
AJF61952.1
Small GTP-binding protein.
   
 0.780
AJF61201.1
DNA double-strand break repair protein Mre11.
 
 
 0.694
dnaK
Chaperone protein DnaK; Acts as a chaperone.
  
 0.690
psmA
Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
 
 
 0.595
AJF61443.1
Hypothetical protein; Belongs to the AAA ATPase family.
 
 
0.593
psmB
Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
 0.584
AJF60916.1
Serine/threonine protein kinase.
   
 0.566
AJF62055.1
Serine/threonine protein kinase.
   
 0.566
AJF61565.1
CTP synthase.
   
 0.556
Your Current Organism:
archaeon GW2011AR15
NCBI taxonomy Id: 1579373
Other names: a. GW2011_AR15, archaeon GW2011_AR15
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