STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS41386.1DEAD/DEAH box helicase. (215 aa)    
Predicted Functional Partners:
AKS41388.1
Pfam:pfam01068 ATP dependent DNA ligase domain.
 
   
 0.956
AKS41387.1
Putative ATP-dependent helicase protein; Pfam:pfam08494 DEAD/H associated.
 
    0.955
AKS41389.1
mRNA 3-end processing factor; Pfam:pfam12706 Beta-lactamase superfamily domain.
 
     0.950
AKS41954.1
ATP-dependent DNA helicase; Pfam:pfam08494 DEAD/H associated.
 
    0.666
AKS41385.1
SM-20-related protein; Pfam:pfam13640 2OG-Fe(II) oxygenase superfamily.
       0.507
AKS41390.1
Membrane protein; Pfam:pfam13194 Domain of unknown function (DUF4010).
       0.501
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.