STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS41720.1ATPase AAA; Pfam:pfam00158 Sigma-54 interaction domain. (331 aa)    
Predicted Functional Partners:
AKS42797.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.850
AKS42872.1
Histidine kinase; Pfam:pfam12860 PAS fold.
   
 
 0.693
AKS42374.1
Phage shock protein PspA; Pfam:pfam04012 PspA/IM30 family.
 
   
 0.594
radA
DNA repair protein radA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.547
AKS41409.1
Glutamate synthase, large subunit; Pfam:pfam01645 Conserved region in glutamate synthase.
     
 0.525
AKS42375.1
Pfam:pfam06667 Phage shock protein B.
 
     0.504
AKS42768.1
Hypothetical protein; Pfam:pfam12860 PAS fold.
   
 
 0.445
AKS43128.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.443
AKS42376.1
Phage shock protein C; Pfam:pfam04024 PspC domain.
 
     0.442
AKS41585.1
Hypothetical protein; Pfam:pfam00175 Oxidoreductase NAD-binding domain.
     
 0.437
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.