STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS41930.1Putative TRAP dicarboxylate transporter; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7. (337 aa)    
Predicted Functional Partners:
AKS41929.1
Hypothetical protein.
 
 
 
 0.985
AKS41931.1
Hypothetical protein; Pfam:pfam04290 Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.982
AKS41932.1
TRAP dicarboxylate transporter-DctM subunit; Pfam:pfam06808 DctM-like transporters.
 
  
 0.971
folD
Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.782
AKS41927.1
Pfam:pfam00255 Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.570
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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