STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS42031.1Peptidase; Pfam:pfam01551 Peptidase family M23. (271 aa)    
Predicted Functional Partners:
AKS42032.1
Hypothetical protein.
       0.773
AKS42030.1
Putative membrane-bound lytic murein transglycosylase; Pfam:pfam01464 Transglycosylase SLT domain.
  
  
 0.754
AKS41969.1
Hypothetical protein; Pfam:pfam01551 Peptidase family M23.
 
   
 0.737
AKS43165.1
Pfam:pfam01551 Peptidase family M23.
  
     0.715
AKS41685.1
Peptidoglycan hydrolase; Pfam:pfam01551 Peptidase family M23.
 
   
 0.613
AKS42847.1
Penicillin-binding protein, 1A family; Pfam:pfam00912 Transglycosylase.
  
   
 0.547
rlmB
23S rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.
  
    0.513
AKS42027.1
CMP/dCMP deaminase zinc-binding; Pfam:pfam00383 Cytidine and deoxycytidylate deaminase zinc-binding region.
       0.492
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.486
AKS41687.1
Protein hfq; Pfam:pfam01520 N-acetylmuramoyl-L-alanine amidase.
 
  
 0.454
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.