STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
idiIsopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (196 aa)    
Predicted Functional Partners:
AKS42270.1
Diphosphomevalonate decarboxylase; Pfam:pfam00288 GHMP kinases N terminal domain.
 
 0.996
AKS42268.1
Pfam:pfam00368 Hydroxymethylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
 
  
 0.962
AKS40787.1
Farnesyl-diphosphate synthase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.955
AKS42269.1
Hypothetical protein.
 
  
 0.765
AKS43020.1
Putative hydroxymethylglutaryl-CoA synthase; Pfam:pfam01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal.
 
  
 0.765
AKS41417.1
Hypothetical protein; Pfam:pfam01494 FAD binding domain.
  
  
 0.643
AKS41418.1
2-polyprenyl-6-methoxyphenol 4-hydroxylase; Pfam:pfam01494 FAD binding domain.
  
  
 0.624
AKS42388.1
Octaprenyl-diphosphate synthase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.609
AKS42071.1
Hypothetical protein; Pfam:pfam00494 Squalene/phytoene synthase.
  
  
 0.554
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
  
 0.549
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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