STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS42487.1Hypothetical protein; Pfam:pfam13145 PPIC-type PPIASE domain. (335 aa)    
Predicted Functional Partners:
AKS42485.1
Cadherin.
 
     0.881
AKS42488.1
Hypothetical protein; Pfam:pfam10282 Lactonase, 7-bladed beta-propeller.
 
     0.836
AKS42484.1
Hypothetical protein; Pfam:pfam10282 Lactonase, 7-bladed beta-propeller.
 
     0.800
AKS42486.1
Hypothetical protein.
       0.782
AKS42489.1
Pfam:pfam00069 Protein kinase domain.
  
   0.522
yajC
Preprotein translocase subunit YidC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
  
  
 0.472
AKS42490.1
RNA polymerase sigma 70; Pfam:pfam07638 ECF sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.453
secD
Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
  
 0.450
AKS42537.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.