STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS43050.1Hypothetical protein; Pfam:pfam13365 Trypsin-like peptidase domain. (537 aa)    
Predicted Functional Partners:
AKS41480.1
Outer membrane protein/peptidoglycan-associated (Lipo)protein; Pfam:pfam00691 OmpA family.
   
 
 0.635
AKS43185.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.582
AKS42445.1
Pfam:pfam03872 Anti sigma-E protein RseA, N-terminal domain.
  
 
 0.579
AKS42872.1
Histidine kinase; Pfam:pfam12860 PAS fold.
  
  
 0.475
AKS40916.1
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Pfam:pfam02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
  0.458
AKS43049.1
Hypothetical protein; Pfam:pfam02036 SCP-2 sterol transfer family.
 
     0.444
pnp
Hypothetical protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.427
AKS42387.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
   
 0.409
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.