STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS43119.1Coproporphyrinogen III oxidase; Pfam:pfam04055 Radical SAM superfamily; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (464 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.953
AKS40950.1
Membrane protein; Pfam:pfam03653 Uncharacterized protein family (UPF0093).
    
 0.918
AKS43120.1
Fumarate and nitrate reduction regulatory protein; Pfam:pfam00027 Cyclic nucleotide-binding domain.
 
  
 0.825
AKS41649.1
Pfam:pfam03922 OmpW family.
 
  
 0.800
AKS43105.1
Peptidase S41; Pfam:pfam02433 Cytochrome C oxidase, mono-heme subunit/FixO.
 
  
 0.790
AKS43104.1
Pfam:pfam00115 Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.787
AKS43109.1
(Fe-S)-binding protein; Pfam:pfam13746 4Fe-4S dicluster domain.
 
  
 0.752
AKS43107.1
Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.613
AKS41409.1
Glutamate synthase, large subunit; Pfam:pfam01645 Conserved region in glutamate synthase.
     
 0.525
AKS43118.1
Peptidase S9, prolyl oligopeptidase active site domain protein; Pfam:pfam00326 Prolyl oligopeptidase family.
       0.517
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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