STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS43150.1PAS modulated sigma54 specific transcriptional regulator, Fis family; Pfam:pfam00158 Sigma-54 interaction domain. (560 aa)    
Predicted Functional Partners:
AKS43151.1
Pfam:pfam00069 Protein kinase domain.
   
   0.823
AKS42797.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.821
AKS41901.1
2-oxoglutarate dehydrogenase E1 component; Pfam:pfam02779 Transketolase, pyrimidine binding domain.
    
 
 0.629
AKS41409.1
Glutamate synthase, large subunit; Pfam:pfam01645 Conserved region in glutamate synthase.
    
 
 0.620
AKS42872.1
Histidine kinase; Pfam:pfam12860 PAS fold.
  
  
 0.576
AKS42971.1
Dihydrolipoamide dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.528
AKS40721.1
Hypothetical protein; Pfam:pfam00990 GGDEF domain.
  
  
 0.522
AKS43185.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.461
AKS42434.1
Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain.
  
  
 0.443
AKS43149.1
Hypothetical protein.
       0.437
Your Current Organism:
Wenzhouxiangella marina
NCBI taxonomy Id: 1579979
Other names: CGMCC 1.14936, Chromatiales bacterium Ma-11, KCTC 42284, MCCC 1K00261, W. marina, Wenzhouxiangella marina Wang et al. 2015, strain Ma-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.