STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFT23959.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)    
Predicted Functional Partners:
HMPREF3175_05225
Saccharopine dehydrogenase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.760
OFT24552.1
Succinate dehydrogenase, cytochrome b556 subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.599
OFT23960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.586
OFT23006.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.492
OFT23647.1
methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.450
atpE
F0F1 ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 
  0.428
OFT23961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.420
OFT23962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.420
Your Current Organism:
Arthrobacter sp. HMSC08H08
NCBI taxonomy Id: 1581143
Other names: A. sp. HMSC08H08
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.