STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEN56136.1Uncharacterized lipoprotein. (408 aa)    
Predicted Functional Partners:
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.869
bamE
Exported protein of unknown function; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.773
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
    0.758
bamB
Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.691
CEN55181.1
Homologs of previously reported genes of unknown function.
  
     0.676
CEN56137.1
Beta-lactamase domain protein.
       0.629
CEN56127.1
Homologs of previously reported genes of unknown function.
 
     0.613
CEN56055.1
Methyltransferase type 11.
  
     0.611
nudB
dATP pyrophosphohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.541
CEN55165.1
Putative proline rich signal peptide protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.537
Your Current Organism:
Methylopumilus turicensis
NCBI taxonomy Id: 1581680
Other names: C. Methylopumilus turicensis, Candidatus Methylopumilus turicensis, Methylophilaceae bacterium MMS-10A-171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.