STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY12330.1PFAM: Xylose isomerase, TIM barrel domain; KEGG: sme:SM_b20711 hypothetical protein. (267 aa)    
Predicted Functional Partners:
ADY12332.1
Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: gym:GYMC10_3207 oxidoreductase domain protein.
 
    0.635
ADY12331.1
Beta-glucuronidase; KEGG: cpy:Cphy_0530 beta-galactosidase; PFAM: Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, TIM barrel; Belongs to the glycosyl hydrolase 2 family.
       0.559
ADY12807.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_2262 extracellular solute-binding protein family 1.
  
     0.516
ADY12369.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_3599 extracellular solute-binding protein family 1.
  
     0.512
xylB
KEGG: xylulokinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.
     
  0.499
ADY14239.1
Xylulokinase; KEGG: kol:Kole_0162 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; Belongs to the FGGY kinase family.
     
  0.499
ADY11916.1
KEGG: kol:Kole_0990 myo-inositol catabolism IolB domain protein.
  
    0.477
Your Current Organism:
Sphaerochaeta globosa
NCBI taxonomy Id: 158189
Other names: S. globosa str. Buddy, Sphaerochaeta globosa str. Buddy, Sphaerochaeta sp. Buddy, Spirochaeta sp. Buddy
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