STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY12850.1KEGG: hor:Hore_08230 WD40 domain protein beta propeller. (884 aa)    
Predicted Functional Partners:
ADY12424.1
KEGG: glo:Glov_2766 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal.
 
 
 0.840
ADY12011.1
Hypothetical protein.
  
 
 0.753
ADY14262.1
Cell wall/surface repeat protein; KEGG: elm:ELI_1175 hypothetical protein; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria/Bacterioides repeat.
  
 
 0.753
ADY13872.1
KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.
 
     0.734
ADY13199.1
Hypothetical protein; KEGG: ssm:Spirs_2058 TPR repeat-containing protein.
  
  
 0.691
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.614
ADY12427.1
PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: has:Halsa_1357 TonB-dependent receptor.
  
 
 
 0.604
ADY14012.1
KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.
 
     0.576
ADY13123.1
SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; KEGG: ssm:Spirs_1866 PUR-alpha/beta/gamma DNA/RNA-binding protein.
  
     0.554
ADY13828.1
PFAM: Polysaccharide export protein; KEGG: sta:STHERM_c15850 polysaccharide biosynthesis protein.
 
     0.541
Your Current Organism:
Sphaerochaeta globosa
NCBI taxonomy Id: 158189
Other names: S. globosa str. Buddy, Sphaerochaeta globosa str. Buddy, Sphaerochaeta sp. Buddy, Spirochaeta sp. Buddy
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