STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY12964.1Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amt:Amet_0294 TetR family transcriptional regulator. (189 aa)    
Predicted Functional Partners:
ADY14420.1
KEGG: sae:NWMN_0141 hypothetical protein.
  
     0.584
ADY11993.1
Helix-turn-helix domain protein; KEGG: eel:EUBELI_20017 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
     0.533
ADY12965.1
KEGG: rce:RC1_0157 hypothetical protein.
       0.532
ADY13874.1
Helix-turn-helix domain protein; KEGG: csh:Closa_1639 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
   
 0.480
ADY12966.1
KEGG: rva:Rvan_3184 hypothetical protein.
       0.451
ADY13075.1
MATE efflux family protein; KEGG: cbt:CLH_1502 Na+-driven multidrug efflux pump; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein.
 
     0.418
ADY13388.1
KEGG: ele:Elen_0282 hypothetical protein.
  
     0.412
Your Current Organism:
Sphaerochaeta globosa
NCBI taxonomy Id: 158189
Other names: S. globosa str. Buddy, Sphaerochaeta globosa str. Buddy, Sphaerochaeta sp. Buddy, Spirochaeta sp. Buddy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.