STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY13018.1HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: tva:TVAG_095240 haloacid dehalogenase-like hydrolase family protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase. (221 aa)    
Predicted Functional Partners:
ADY13019.1
TIGRFAM: Citrate synthase, type II; KEGG: scl:sce8281 hypothetical protein; PFAM: Citrate synthase-like.
  
    0.778
ADY13020.1
Regulatory protein ArsR; KEGG: csh:Closa_1269 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
       0.514
ADY12998.1
Alpha amylase catalytic region; KEGG: lbf:LBF_3272 glycosidase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain.
 
  
 0.410
ADY12488.1
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Dehydrogenase, E1 component; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: fri:FraEuI1c_5335 dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain.
   
  
 0.402
ADY14043.1
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; Transketolase, C-terminal; KEGG: sta:STHERM_c08250 putative dehydrogenase, fusion; SMART: Transketolase-like, pyrimidine-binding domain.
   
  
 0.402
Your Current Organism:
Sphaerochaeta globosa
NCBI taxonomy Id: 158189
Other names: S. globosa str. Buddy, Sphaerochaeta globosa str. Buddy, Sphaerochaeta sp. Buddy, Spirochaeta sp. Buddy
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