Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEV28566.1 | AEV28567.1 | SpiGrapes_0730 | SpiGrapes_0731 | Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. | Hypothetical protein; PFAM: Uncharacterised ACR, YkgG family COG1556. | 0.538 |
AEV28566.1 | AEV28568.1 | SpiGrapes_0730 | SpiGrapes_0732 | Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. | PFAM: Iron-containing alcohol dehydrogenase. | 0.418 |
AEV28567.1 | AEV28566.1 | SpiGrapes_0731 | SpiGrapes_0730 | Hypothetical protein; PFAM: Uncharacterised ACR, YkgG family COG1556. | Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. | 0.538 |
AEV28567.1 | AEV28568.1 | SpiGrapes_0731 | SpiGrapes_0732 | Hypothetical protein; PFAM: Uncharacterised ACR, YkgG family COG1556. | PFAM: Iron-containing alcohol dehydrogenase. | 0.602 |
AEV28568.1 | AEV28566.1 | SpiGrapes_0732 | SpiGrapes_0730 | PFAM: Iron-containing alcohol dehydrogenase. | Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. | 0.418 |
AEV28568.1 | AEV28567.1 | SpiGrapes_0732 | SpiGrapes_0731 | PFAM: Iron-containing alcohol dehydrogenase. | Hypothetical protein; PFAM: Uncharacterised ACR, YkgG family COG1556. | 0.602 |