Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEV27936.1 | AEV28151.1 | SpiGrapes_0072 | SpiGrapes_0291 | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | Hypothetical protein. | 0.445 |
AEV27936.1 | AEV28230.1 | SpiGrapes_0072 | SpiGrapes_0372 | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | PFAM: ST7 protein. | 0.445 |
AEV27936.1 | AEV28460.1 | SpiGrapes_0072 | SpiGrapes_0618 | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | Hypothetical protein. | 0.407 |
AEV27936.1 | AEV29423.1 | SpiGrapes_0072 | SpiGrapes_1616 | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | Hypothetical protein. | 0.445 |
AEV27936.1 | AEV29694.1 | SpiGrapes_0072 | SpiGrapes_1900 | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. | 0.433 |
AEV28151.1 | AEV27936.1 | SpiGrapes_0291 | SpiGrapes_0072 | Hypothetical protein. | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | 0.445 |
AEV28151.1 | AEV29694.1 | SpiGrapes_0291 | SpiGrapes_1900 | Hypothetical protein. | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. | 0.422 |
AEV28151.1 | AEV30976.1 | SpiGrapes_0291 | SpiGrapes_3232 | Hypothetical protein. | Hypothetical protein. | 0.582 |
AEV28151.1 | rpoA | SpiGrapes_0291 | SpiGrapes_2159 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.632 |
AEV28151.1 | rpoB | SpiGrapes_0291 | SpiGrapes_2128 | Hypothetical protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.615 |
AEV28230.1 | AEV27936.1 | SpiGrapes_0372 | SpiGrapes_0072 | PFAM: ST7 protein. | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | 0.445 |
AEV28230.1 | AEV29694.1 | SpiGrapes_0372 | SpiGrapes_1900 | PFAM: ST7 protein. | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. | 0.422 |
AEV28230.1 | AEV30976.1 | SpiGrapes_0372 | SpiGrapes_3232 | PFAM: ST7 protein. | Hypothetical protein. | 0.582 |
AEV28230.1 | rpoA | SpiGrapes_0372 | SpiGrapes_2159 | PFAM: ST7 protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.632 |
AEV28230.1 | rpoB | SpiGrapes_0372 | SpiGrapes_2128 | PFAM: ST7 protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.615 |
AEV28460.1 | AEV27936.1 | SpiGrapes_0618 | SpiGrapes_0072 | Hypothetical protein. | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; Hpt domain. | 0.407 |
AEV28460.1 | AEV29694.1 | SpiGrapes_0618 | SpiGrapes_1900 | Hypothetical protein. | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. | 0.419 |
AEV28460.1 | AEV30976.1 | SpiGrapes_0618 | SpiGrapes_3232 | Hypothetical protein. | Hypothetical protein. | 0.582 |
AEV28460.1 | rpoA | SpiGrapes_0618 | SpiGrapes_2159 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.632 |
AEV28460.1 | rpoB | SpiGrapes_0618 | SpiGrapes_2128 | Hypothetical protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.610 |
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