STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN22176.1Sortase. (241 aa)    
Predicted Functional Partners:
KRN24258.1
Hypothetical protein.
  
     0.616
rpoE
DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.540
KRN23975.1
Methyl-accepting chemotaxis-like protein.
  
     0.461
KRN23527.1
Glycosyltransferase.
  
     0.457
KRN22105.1
Hypothetical protein.
  
     0.438
KRN23751.1
Hypothetical protein.
  
     0.424
rex
Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
       0.421
KRN24608.1
Hypothetical protein.
  
     0.413
KRN23735.1
dUTPase.
  
     0.404
Your Current Organism:
Weissella confusa
NCBI taxonomy Id: 1583
Other names: ATCC 10881, BCRC 14002, CCRC 14002, CCRC:14002, CCUG 30113, CIP 103172, CIP 54.169, DSM 20196, LMG 9497, LMG:9497, Lactobacillus confusa (sic), Lactobacillus confusus, Lactobacillus coprophilus subsp. confusus, NCIMB 9311, W. confusa, strain TCC 10881
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.