Fcan01_21556 protein (Folsomia candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Fcan01_21556

Protein krasavietz. (417 aa)

Predicted Functional Partners:

Fcan01_26281

0.734

Fcan01_12771

0.718

Fcan01_09688

0.638

Fcan01_03818

0.636

Fcan01_07081

0.475

Fcan01_12683

0.460

Fcan01_13609

0.453

Fcan01_02851

0.451

Fcan01_07984

0.437

Fcan01_12708

0.429

Your Current Organism:

Folsomia candida

NCBI taxonomy Id: 158441
Other names: F. candida

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fcan01_02851	Fcan01_21556	A0A226EYL2	A0A226DEV5	NIF3-like protein 1.	Protein krasavietz.	0.451
Fcan01_03818	Fcan01_21556	A0A226EY38	A0A226DEV5	Transmembrane protein 43.	Protein krasavietz.	0.636
Fcan01_07081	Fcan01_21556	A0A226EPA5	A0A226DEV5	Cell division cycle 5-like protein.	Protein krasavietz.	0.475
Fcan01_07984	Fcan01_21556	A0A226EJE4	A0A226DEV5	DNA-directed RNA polymerase II subunit RPB4.	Protein krasavietz.	0.437
Fcan01_09688	Fcan01_13609	A0A226EFB5	A0A226E308	Eukaryotic translation initiation factor 2 subunit 2.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.994
Fcan01_09688	Fcan01_21556	A0A226EFB5	A0A226DEV5	Eukaryotic translation initiation factor 2 subunit 2.	Protein krasavietz.	0.638
Fcan01_12683	Fcan01_21556	A0A226E8R8	A0A226DEV5	Protein ovo.	Protein krasavietz.	0.460
Fcan01_12708	Fcan01_21556	A0A226E5Y3	A0A226DEV5	Acid sphingomyelinase-like phosphodiesterase 3b.	Protein krasavietz.	0.429
Fcan01_12771	Fcan01_21556	A0A226E423	A0A226DEV5	Ankyrin repeat and MYND domain-containing protein 2.	Protein krasavietz.	0.718
Fcan01_12771	Fcan01_26281	A0A226E423	A0A226D1Y9	Ankyrin repeat and MYND domain-containing protein 2.	Sorting nexin-13.	0.751
Fcan01_13609	Fcan01_09688	A0A226E308	A0A226EFB5	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor 2 subunit 2.	0.994
Fcan01_13609	Fcan01_21556	A0A226E308	A0A226DEV5	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Protein krasavietz.	0.453
Fcan01_21556	Fcan01_02851	A0A226DEV5	A0A226EYL2	Protein krasavietz.	NIF3-like protein 1.	0.451
Fcan01_21556	Fcan01_03818	A0A226DEV5	A0A226EY38	Protein krasavietz.	Transmembrane protein 43.	0.636
Fcan01_21556	Fcan01_07081	A0A226DEV5	A0A226EPA5	Protein krasavietz.	Cell division cycle 5-like protein.	0.475
Fcan01_21556	Fcan01_07984	A0A226DEV5	A0A226EJE4	Protein krasavietz.	DNA-directed RNA polymerase II subunit RPB4.	0.437
Fcan01_21556	Fcan01_09688	A0A226DEV5	A0A226EFB5	Protein krasavietz.	Eukaryotic translation initiation factor 2 subunit 2.	0.638
Fcan01_21556	Fcan01_12683	A0A226DEV5	A0A226E8R8	Protein krasavietz.	Protein ovo.	0.460
Fcan01_21556	Fcan01_12708	A0A226DEV5	A0A226E5Y3	Protein krasavietz.	Acid sphingomyelinase-like phosphodiesterase 3b.	0.429
Fcan01_21556	Fcan01_12771	A0A226DEV5	A0A226E423	Protein krasavietz.	Ankyrin repeat and MYND domain-containing protein 2.	0.718