STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fcan01_18436DNA excision repair protein haywire. (813 aa)    
Predicted Functional Partners:
Fcan01_18676
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
  
 0.999
Fcan01_08299
General transcription factor IIH subunit 3.
    
 0.998
Fcan01_05299
TFIIH basal transcription factor complex helicase XPD subunit.
   
 0.998
Fcan01_02338
CDK-activating kinase assembly factor MAT1.
    
 0.998
Fcan01_14467
General transcription factor IIE subunit 1.
  
 0.997
Fcan01_13493
General transcription factor IIH subunit.
    
 0.997
Fcan01_07113
Transcription initiation factor IIB.
    
 0.985
Fcan01_26249
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.982
Fcan01_02641
DNA repair protein complementing XP-A cells.
    
 0.976
Fcan01_23427
DNA repair protein complementing XP-G cells.
   
 0.973
Your Current Organism:
Folsomia candida
NCBI taxonomy Id: 158441
Other names: F. candida
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