STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fcan01_14768Nucleolysin TIA-1. (529 aa)    
Predicted Functional Partners:
Fcan01_24717
Calcium homeostasis endoplasmic reticulum protein.
   
 
 0.804
Fcan01_06225
Protein suppressor of forked.
   
 0.761
Fcan01_03234
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 0.723
Fcan01_22636
Small nuclear ribonucleoprotein Sm D2.
   
 0.722
Fcan01_28034
RNA-binding protein with serine-rich domain 1.
   
 0.701
Fcan01_06203
Symplekin.
   
 0.701
Fcan01_07847
Putative small nuclear ribonucleoprotein G.
   
 0.695
Fcan01_21081
Uncharacterized protein.
   
 0.693
Fcan01_01887
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.693
Fcan01_21675
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.692
Your Current Organism:
Folsomia candida
NCBI taxonomy Id: 158441
Other names: F. candida
Server load: medium (76%) [HD]