STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fcan01_13068ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (688 aa)    
Predicted Functional Partners:
Fcan01_05553
Fanconi anemia group M protein.
      
 0.604
Fcan01_12730
DNA replication ATP-dependent helicase/nuclease DNA2.
      
 0.535
Fcan01_21166
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.
     
 0.525
Fcan01_02557
Nucleolar protein 6.
      
 0.504
Fen1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
    
 
 0.457
Fcan01_18679
Exosome complex component MTR3.
      
 0.450
Fcan01_13663
X-ray repair cross-complementing protein 6.
    
 
 0.441
Fcan01_14894
RecQ-mediated instability protein 1.
    
 
 0.417
Fcan01_18498
Uncharacterized protein.
  
  
 0.415
Fcan01_03956
Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.415
Your Current Organism:
Folsomia candida
NCBI taxonomy Id: 158441
Other names: F. candida
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