STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fcan01_08728Uncharacterized protein. (3022 aa)    
Predicted Functional Partners:
Fcan01_13517
Serine-arginine protein 55.
    
 0.540
Fcan01_21081
Uncharacterized protein.
   
 0.491
Fcan01_07847
Putative small nuclear ribonucleoprotein G.
   
 0.484
Fcan01_03234
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
    
 0.484
Fcan01_06988
Protein painting of fourth.
   
 0.480
Fcan01_07954
Splicing factor 3B subunit 1.
   
 0.476
Fcan01_04531
Serine/arginine-rich splicing factor 2.
    
 0.459
Fcan01_07865
Eukaryotic translation initiation factor 2 subunit 3, Y-linked.
   
 0.451
Fcan01_02247
Eukaryotic translation initiation factor 2 subunit 1.
   
 0.439
Fcan01_01991
Putative ATP-dependent RNA helicase YTHDC2.
   
 0.438
Your Current Organism:
Folsomia candida
NCBI taxonomy Id: 158441
Other names: F. candida
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