Fcan01_05037 protein (Folsomia candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Fcan01_05037

C2H2-type domain-containing protein. (427 aa)

Predicted Functional Partners:

Fcan01_08457

0.880

Fcan01_08958

0.814

Fcan01_03278

0.803

Fcan01_15266

0.730

Fcan01_03069

0.701

Fcan01_02363

0.696

Fcan01_18384

0.667

Fcan01_13754

0.654

Fcan01_02043

0.641

Fcan01_14322

0.618

Your Current Organism:

Folsomia candida

NCBI taxonomy Id: 158441
Other names: F. candida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fcan01_02043	Fcan01_02363	A0A226F6P8	A0A226EYW3	Uncharacterized protein.	Putative ribosome biogenesis protein RLP24.	0.984
Fcan01_02043	Fcan01_03069	A0A226F6P8	A0A226F0M3	Uncharacterized protein.	TRASH domain-containing protein.	0.999
Fcan01_02043	Fcan01_03278	A0A226F6P8	A0A226EYP5	Uncharacterized protein.	Guanine nucleotide-binding protein-like 1.	0.835
Fcan01_02043	Fcan01_05037	A0A226F6P8	A0A226EU76	Uncharacterized protein.	C2H2-type domain-containing protein.	0.641
Fcan01_02043	Fcan01_08457	A0A226F6P8	A0A226EKZ8	Uncharacterized protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.858
Fcan01_02043	Fcan01_08958	A0A226F6P8	A0A226EG53	Uncharacterized protein.	Proliferation-associated protein 2G4.	0.949
Fcan01_02043	Fcan01_13754	A0A226F6P8	A0A226E1H0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
Fcan01_02043	Fcan01_14322	A0A226F6P8	A0A226E2W1	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.999
Fcan01_02043	Fcan01_15266	A0A226F6P8	A0A226E017	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.861
Fcan01_02043	Fcan01_18384	A0A226F6P8	A0A226DMQ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
Fcan01_02363	Fcan01_02043	A0A226EYW3	A0A226F6P8	Putative ribosome biogenesis protein RLP24.	Uncharacterized protein.	0.984
Fcan01_02363	Fcan01_03069	A0A226EYW3	A0A226F0M3	Putative ribosome biogenesis protein RLP24.	TRASH domain-containing protein.	0.953
Fcan01_02363	Fcan01_03278	A0A226EYW3	A0A226EYP5	Putative ribosome biogenesis protein RLP24.	Guanine nucleotide-binding protein-like 1.	0.915
Fcan01_02363	Fcan01_05037	A0A226EYW3	A0A226EU76	Putative ribosome biogenesis protein RLP24.	C2H2-type domain-containing protein.	0.696
Fcan01_02363	Fcan01_08457	A0A226EYW3	A0A226EKZ8	Putative ribosome biogenesis protein RLP24.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.981
Fcan01_02363	Fcan01_08958	A0A226EYW3	A0A226EG53	Putative ribosome biogenesis protein RLP24.	Proliferation-associated protein 2G4.	0.971
Fcan01_02363	Fcan01_13754	A0A226EYW3	A0A226E1H0	Putative ribosome biogenesis protein RLP24.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.970
Fcan01_02363	Fcan01_14322	A0A226EYW3	A0A226E2W1	Putative ribosome biogenesis protein RLP24.	Ribosomal_L18_c domain-containing protein.	0.986
Fcan01_02363	Fcan01_15266	A0A226EYW3	A0A226E017	Putative ribosome biogenesis protein RLP24.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.995
Fcan01_02363	Fcan01_18384	A0A226EYW3	A0A226DMQ3	Putative ribosome biogenesis protein RLP24.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.991