Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC114855417Inactive ubiquitin carboxyl-terminal hydrolase 53-like. (828 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.750
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.717
psmb1
Proteasome 20S subunit beta 1.
    
   0.612
ENSBSLP00000037601
Ubiquitin B.
    
  0.556
ENSBSLP00000006753
Zgc:112163.
      
 0.513
tcap
Titin-cap.
   
 
 0.488
mphosph6
M-phase phosphoprotein 6.
     
  0.463
c1d
C1D nuclear receptor corepressor.
     
  0.463
rfc5
Replication factor C subunit 5.
      
 0.458
ddx56
DEAD-box helicase 56.
    
 
 0.458
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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