STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114857842G/T mismatch-specific thymine DNA glycosylase-like. (287 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin like modifier 1.
   
 0.957
gart
annotation not available
  
 
  0.852
sumo2
Small ubiquitin like modifier 2.
   
 0.820
LOC114861721
Small ubiquitin-related modifier 2-like.
   
 0.820
SUMO3
Small ubiquitin-related modifier 3.
   
 0.820
LOC114846839
Small ubiquitin-related modifier 3.
   
 0.820
ENSBSLP00000024732
annotation not available
   
 0.766
ube2i
Ubiquitin conjugating enzyme E2 I.
   
 0.765
LOC114860313
SUMO-conjugating enzyme UBC9-like.
   
 0.764
apex1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
  
 
 0.753
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.