Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hhipHedgehog interacting protein. (703 aa)    
Predicted Functional Partners:
shh
Sonic hedgehog signaling molecule.
    
 0.995
LOC114847652
Indian hedgehog B protein-like.
    
 0.993
dhh
Desert hedgehog signaling molecule.
    
 0.989
ENSBSLP00000007467
Indian hedgehog signaling molecule b.
    
 0.941
sorl1
Sortilin related receptor 1.
    
 0.767
dym
Dymeclin.
      
 0.761
ptch2
Patched 2.
    
 
 0.761
nrp1
Neuropilin 1.
    
 
 0.757
usp38
Ubiquitin specific peptidase 38.
      
 0.730
smo
Smoothened, frizzled class receptor.
    
 
 0.730
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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