Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114853302TGF-beta receptor type-1-like. (509 aa)    
Predicted Functional Partners:
TGFBR2
Transforming growth factor beta receptor 2.
   
0.993
LOC114867748
Transforming growth factor beta-1 proprotein-like.
    
 0.990
LOC114846902
TGF-beta receptor type-2-like.
   
0.985
smurf1
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.977
LOC114860165
E3 ubiquitin-protein ligase SMURF2.
    
 0.977
SMURF2
E3 ubiquitin-protein ligase SMURF2-like.
    
 0.977
LOC114864697
Transforming growth factor beta-2 proprotein-like.
    
 0.977
tgfb2
Transforming growth factor beta 2.
    
 0.977
tgfb3
Transforming growth factor beta 3.
    
 0.971
smad2
SMAD family member 2.
    
 0.969
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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