STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem88Transmembrane protein 88. (227 aa)    
Predicted Functional Partners:
mfsd13a
Major facilitator superfamily domain containing 13A.
      
 0.540
tmem98
Transmembrane protein 98.
      
 0.531
mlycd
malonyl-CoA decarboxylase.
    
   0.519
c5h1orf158
Chromosome 5 C1orf158 homolog.
    
   0.493
tmem170a
Transmembrane protein 170A.
      
 0.453
LOC114857037
Transmembrane protein 168-like.
      
 0.434
LOC114862794
Transmembrane protein 168-A-like.
      
 0.434
ENSBSLP00000037355
Glycogen synthase kinase binding protein.
      
 0.426
ndc1
NDC1 transmembrane nucleoporin.
      
 0.422
tmem94
Transmembrane protein 94.
      
 0.410
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.