Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC114842936Copper-transporting ATPase 2-like. (1348 aa)    
Predicted Functional Partners:
ccs
Copper chaperone for superoxide dismutase.
  
 0.984
atox1
Antioxidant 1 copper chaperone.
    
 0.982
commd1
Copper metabolism domain containing 1.
    
 
 0.919
pdzd11
PDZ domain containing 11.
    
 0.809
LOC114853114
Ceruloplasmin-like.
  
 
 0.795
slc31a1
Solute carrier family 31 member 1.
    
 
 0.737
LOC114864453
Coagulation factor VIII-like.
  
 
 0.733
f5
Coagulation factor V.
  
 
 0.733
RS1
Retinoschisin-like.
  
 
 0.722
LOC114846854
Neuropilin-2-like.
  
 
 0.722
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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