STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBL5Ubiquitin like 5. (73 aa)    
Predicted Functional Partners:
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.989
mfap1
Microfibril associated protein 1.
    
 0.984
txnl4a
Thioredoxin like 4A.
   
  0.961
sf3b5
Splicing factor 3b subunit 5.
   
 
 0.956
zmat2
Zinc finger matrin-type 2.
   
 0.954
wdr83
WD repeat domain 83.
    
 
 0.939
ENSBSLP00000007473
ISY1 splicing factor homolog.
   
 0.936
prpf6
pre-mRNA processing factor 6.
    
 0.936
cdc40
Cell division cycle 40.
    
 0.933
wbp4
WW domain binding protein 4.
    
 0.931
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.