STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114857509Calpain-2 catalytic subunit-like. (697 aa)    
Predicted Functional Partners:
LOC114870532
Calpain-2 catalytic subunit-like.
  
  
 
0.902
LOC114857498
Calpain-2 catalytic subunit-like.
  
  
 
0.901
bax
BCL2 associated X, apoptosis regulator.
    
 0.901
LOC114852574
Apoptosis regulator BAX-like.
   
 0.901
LOC114869584
Calpain small subunit 1-like.
   
 0.874
cast
Calpastatin.
   
 0.849
LOC114865883
Grancalcin-like.
   
 0.444
pef1
penta-EF-hand domain containing 1.
    
 0.434
pdcd6
Programmed cell death 6.
    
 0.434
lrguk
Leucine rich repeats and guanylate kinase domain containing.
   
 
 0.422
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.