Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC114851830Cyclin-dependent kinase-like 5. (1164 aa)    
Predicted Functional Partners:
mecp2
methyl-CpG binding protein 2.
    
 
 0.777
fmr1
FMRP translational regulator 1.
    
 
 0.656
RAI2
Retinoic acid induced 2.
      
 0.514
arx
Aristaless related homeobox.
      
 0.511
prune1
Prune exopolyphosphatase 1.
      
 0.470
pcdh19
Protocadherin 19.
      
 0.458
UBE3A
Ubiquitin-protein ligase E3A.
      
 0.454
LOC114866603
Syntaxin-binding protein 1.
      
 0.450
LOC114843883
netrin-G1-like.
      
 0.447
ntng1
Netrin G1.
      
 0.447
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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