Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chmp1aCharged multivesicular body protein 1A. (220 aa)    
Predicted Functional Partners:
chmp2b
Charged multivesicular body protein 2B.
   
 0.993
chmp2a
Charged multivesicular body protein 2A.
   
0.992
vta1
Vesicle trafficking 1.
   
 0.990
LOC114857124
Vacuolar protein sorting-associated protein 4A.
   
 0.984
VPS4B
Vacuolar protein sorting-associated protein 4B-like.
   
 0.984
vps4b
Vacuolar protein sorting 4 homolog B.
   
 0.984
LOC114858940
Charged multivesicular body protein 4b.
   
 0.981
LOC114855998
Charged multivesicular body protein 4b-like.
   
 0.981
LOC114857718
Charged multivesicular body protein 4b-like.
    
 0.966
chmp7
Charged multivesicular body protein 7.
    
 0.964
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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