Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam207aFamily with sequence similarity 207 member A. (243 aa)    
Predicted Functional Partners:
yars1
tyrosyl-tRNA synthetase 1.
  
 
 0.919
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.882
lars1
leucyl-tRNA synthetase 1.
  
 
 0.768
mars1
methionyl-tRNA synthetase 1.
  
 
 0.765
malsu1
Mitochondrial assembly of ribosomal large subunit 1.
  
 0.762
vars1
valyl-tRNA synthetase 1.
  
 
 0.732
kars1
lysyl-tRNA synthetase 1.
  
 
 0.721
qars1
glutaminyl-tRNA synthetase 1.
  
 
 0.692
ftcd
Formimidoyltransferase cyclodeaminase.
     
 0.687
mrpl1
Mitochondrial ribosomal protein L1.
   
 
 0.680
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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