Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000001601Si:dkey-6n21.13. (444 aa)    
Predicted Functional Partners:
LOC114861667
Guanine nucleotide-binding protein G(q) subunit alpha.
   
  0.927
LOC114848961
Guanine nucleotide-binding protein G(q) subunit alpha-like.
   
  0.927
trio
Trio Rho guanine nucleotide exchange factor.
     
  0.448
kalrn
Kalirin RhoGEF kinase.
     
  0.448
LOC114852779
D(4) dopamine receptor-like.
  
  
  0.443
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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