Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114868334ATP-binding cassette sub-family E member 1. (593 aa)    
Predicted Functional Partners:
etf1
Eukaryotic translation termination factor 1.
   
 
 0.995
rps23
Ribosomal protein S23.
   
 0.991
eif3j
Eukaryotic translation initiation factor 3 subunit J.
   
 
 0.989
rps18
Ribosomal protein S18.
   
 0.985
rps7
Ribosomal protein S7.
   
 0.984
rps9
Ribosomal protein S9.
   
 0.984
eif3b
Eukaryotic translation initiation factor 3 subunit B.
   
 
 0.984
eif2s3
Eukaryotic translation initiation factor 2 subunit gamma.
   
 
 0.983
rps21
Ribosomal protein S21.
   
  0.982
eif2s1
Eukaryotic translation initiation factor 2 subunit alpha.
   
 
 0.980
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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