Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
chd5Chromodomain helicase DNA binding protein 5. (2000 aa)    
Predicted Functional Partners:
mta2
Metastasis associated 1 family member 2.
   
 0.934
LOC114848103
Metastasis-associated protein MTA1-like.
   
 0.934
mta3
Metastasis associated 1 family member 3.
   
 0.934
gatad2b
GATA zinc finger domain containing 2B.
   
 0.933
LOC114853921
Transcriptional repressor p66-alpha-like.
   
 0.924
LOC114843968
Transcriptional repressor p66-alpha-like.
   
 0.924
LOC114851763
Histone-binding protein RBBP7.
   
 0.912
rbbp4
RB binding protein 4, chromatin remodeling factor.
   
 0.912
kdm1a
Lysine demethylase 1A.
   
 0.905
HDAC2
Histone deacetylase 2.
   
 0.890
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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