STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114868740Protein phosphatase 1K, mitochondrial-like. (306 aa)    
Predicted Functional Partners:
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.900
bckdha
Branched chain keto acid dehydrogenase E1 subunit alpha.
  
 0.874
dbt
Dihydrolipoamide branched chain transacylase E2.
   
 0.856
med31
Mediator complex subunit 31.
    
  0.790
med14
Mediator complex subunit 14.
    
  0.785
med21
Mediator complex subunit 21.
    
  0.785
med7
Mediator complex subunit 7.
    
  0.785
med6
Mediator complex subunit 6.
    
  0.742
med22
Mediator complex subunit 22.
   
  0.707
med17
Mediator complex subunit 17.
    
  0.698
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.