LOC114851050 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114851050

PC-esterase domain-containing protein 1A-like. (422 aa)

Predicted Functional Partners:

slx4ip

0.548

snx13

0.534

LOC114843629

0.449

rer1

0.442

vps16

0.442

vps50

0.426

rnf24

0.420

ptpra

0.416

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114843629	LOC114851050	ENSBSLP00000019277	ENSBSLP00000001826	Ribonuclease P protein subunit p25-like protein.	PC-esterase domain-containing protein 1A-like.	0.449
LOC114843629	snx13	ENSBSLP00000019277	ENSBSLP00000024497	Ribonuclease P protein subunit p25-like protein.	Sorting nexin 13.	0.535
LOC114851050	LOC114843629	ENSBSLP00000001826	ENSBSLP00000019277	PC-esterase domain-containing protein 1A-like.	Ribonuclease P protein subunit p25-like protein.	0.449
LOC114851050	ptpra	ENSBSLP00000001826	ENSBSLP00000006465	PC-esterase domain-containing protein 1A-like.	Protein tyrosine phosphatase receptor type A.	0.416
LOC114851050	rer1	ENSBSLP00000001826	ENSBSLP00000005628	PC-esterase domain-containing protein 1A-like.	Retention in endoplasmic reticulum sorting receptor 1.	0.442
LOC114851050	rnf24	ENSBSLP00000001826	ENSBSLP00000000039	PC-esterase domain-containing protein 1A-like.	Ring finger protein 24.	0.420
LOC114851050	slx4ip	ENSBSLP00000001826	ENSBSLP00000017037	PC-esterase domain-containing protein 1A-like.	SLX4 interacting protein.	0.548
LOC114851050	snx13	ENSBSLP00000001826	ENSBSLP00000024497	PC-esterase domain-containing protein 1A-like.	Sorting nexin 13.	0.534
LOC114851050	vps16	ENSBSLP00000001826	ENSBSLP00000019285	PC-esterase domain-containing protein 1A-like.	VPS16 core subunit of CORVET and HOPS complexes.	0.442
LOC114851050	vps50	ENSBSLP00000001826	ENSBSLP00000019307	PC-esterase domain-containing protein 1A-like.	VPS50 subunit of EARP/GARPII complex.	0.426
ptpra	LOC114851050	ENSBSLP00000006465	ENSBSLP00000001826	Protein tyrosine phosphatase receptor type A.	PC-esterase domain-containing protein 1A-like.	0.416
ptpra	rnf24	ENSBSLP00000006465	ENSBSLP00000000039	Protein tyrosine phosphatase receptor type A.	Ring finger protein 24.	0.429
rer1	LOC114851050	ENSBSLP00000005628	ENSBSLP00000001826	Retention in endoplasmic reticulum sorting receptor 1.	PC-esterase domain-containing protein 1A-like.	0.442
rnf24	LOC114851050	ENSBSLP00000000039	ENSBSLP00000001826	Ring finger protein 24.	PC-esterase domain-containing protein 1A-like.	0.420
rnf24	ptpra	ENSBSLP00000000039	ENSBSLP00000006465	Ring finger protein 24.	Protein tyrosine phosphatase receptor type A.	0.429
rnf24	vps16	ENSBSLP00000000039	ENSBSLP00000019285	Ring finger protein 24.	VPS16 core subunit of CORVET and HOPS complexes.	0.426
slx4ip	LOC114851050	ENSBSLP00000017037	ENSBSLP00000001826	SLX4 interacting protein.	PC-esterase domain-containing protein 1A-like.	0.548
snx13	LOC114843629	ENSBSLP00000024497	ENSBSLP00000019277	Sorting nexin 13.	Ribonuclease P protein subunit p25-like protein.	0.535
snx13	LOC114851050	ENSBSLP00000024497	ENSBSLP00000001826	Sorting nexin 13.	PC-esterase domain-containing protein 1A-like.	0.534
vps16	LOC114851050	ENSBSLP00000019285	ENSBSLP00000001826	VPS16 core subunit of CORVET and HOPS complexes.	PC-esterase domain-containing protein 1A-like.	0.442