Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114849268Microtubule-associated protein 11-like. (551 aa)    
Predicted Functional Partners:
trappc1
Trafficking protein particle complex 1.
    
 0.954
TRAPPC5
Trafficking protein particle complex subunit 5-like.
    
 0.919
LOC114860126
Trafficking protein particle complex subunit 5-like.
    
 0.919
bcl2l14
BCL2 like 14.
    
   0.893
kank4
KN motif and ankyrin repeat domains 4.
    
   0.859
trappc2l
Trafficking protein particle complex 2 like.
    
 
 0.723
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit.
      
 0.664
adi1
Acireductone dioxygenase 1.
    
   0.638
trappc12
Trafficking protein particle complex 12.
     
 0.585
trappc13
Trafficking protein particle complex 13.
     
 0.580
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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