STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114853121Transmembrane 4 L6 family member 1-like. (197 aa)    
Predicted Functional Partners:
GFRA2
GDNF family receptor alpha-2-like.
   
  
 0.684
lrriq1
Leucine rich repeats and IQ motif containing 1.
      
 0.680
syce1
Synaptonemal complex central element protein 1.
      
 0.678
LOC114860543
SPARC-like protein 1.
      
 0.617
LOC114866275
Protein S100-A13-like.
      
 0.615
LOC114865855
Guanine nucleotide-binding protein G(T) subunit gamma-T1-like.
   
  
 0.527
piwil1
Piwi like RNA-mediated gene silencing 1.
      
 0.514
tank
TRAF family member associated NFKB activator.
      
 0.507
ip6k1
Inositol hexakisphosphate kinase 1.
      
 0.453
LOC114864403
Janus kinase and microtubule-interacting protein 1-like.
      
 0.439
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.